Rbwa
R wrapper for BWA-backtrack and BWA-MEM aligners
Bioconductor version: 3.23 · Package version: 1.16.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Provides an R wrapper for BWA alignment algorithms. Both BWA-backtrack and BWA-MEM are available. Convenience function to build a BWA index from a reference genome is also provided. Currently not supported for Windows machines.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rbwa")Details
| Maintainer | Jean-Philippe Fortin <fortin946@gmail.com> |
| Author | Jean-Philippe Fortin [aut, cre] |
| License | MIT + file LICENSE |
| URL | https://github.com/Jfortin1/Rbwa |
| Bug Reports | https://github.com/crisprVerse/Rbwa/issues |
| System Requirements | GNU make |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Alignment, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/Rbwa/ |
Citation
From within R, enter citation("Rbwa"):
Jean-Philippe Fortin. Rbwa: R wrapper for BWA-backtrack and BWA-MEM aligners. doi:10.18129/B9.bioc.Rbwa, R package version 1.16.0, https://bioconductor.org/packages/Rbwa.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | Rbwa_1.16.0.tar.gz |
| macOS binary (arm64) | Rbwa_1.16.0.tgz |
| macOS binary (x86_64) | Rbwa_1.16.0.tgz |