RUVSeq
This is the released version of RUVSeq; for the devel version, see RUVSeq.
All Bioconductor versions of RUVSeq
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0
Remove Unwanted Variation from RNA-Seq Data
Bioconductor version: 3.23 · Package version: 1.46.0
This package implements the remove unwanted variation (RUV) methods of Risso et al. (2014) for the normalization of RNA-Seq read counts between samples.
Author: Davide Risso [aut, cre, cph], Sandrine Dudoit [aut], Lorena Pantano [ctb], Kamil Slowikowski [ctb]
Maintainer: Davide Risso <risso.davide at gmail.com>
Citation
From within R, enter citation("RUVSeq"):
Davide Risso, Sandrine Dudoit. RUVSeq: Remove Unwanted Variation from RNA-Seq Data. doi:10.18129/B9.bioc.RUVSeq, R package version 1.46.0, https://bioconductor.org/packages/RUVSeq.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RUVSeq")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.46.0 |
| License | Artistic-2.0 |
| URL | https://github.com/drisso/RUVSeq |
| Bug Reports | https://github.com/drisso/RUVSeq/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.0 (R-3.1) (11 years) |
| Downloads rank | 262 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, ImmunoOncology, Preprocessing, RNASeq, Software |
| Package Short Url | https://bioconductor.org/packages/RUVSeq/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RUVSeq")| RUVSeq: Remove Unwanted Variation from RNA-Seq Data | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | RUVSeq_1.46.0.tar.gz |
| Windows binary (x86_64) | RUVSeq_1.46.0.zip |
| macOS binary (arm64) | RUVSeq_1.46.0.tgz |
| macOS binary (x86_64) | RUVSeq_1.46.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RUVSeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RUVSeq |
| Package Downloads Report | Download Stats |
Dependencies
Depends: Biobase, EDASeq (>= 1.99.1), edgeR
Imports: methods, MASS
Suggests: BiocStyle, knitr, RColorBrewer, zebrafishRNASeq, DESeq2
Reverse dependencies
Depends On Me (2): octad, rnaseqGene
Imports Me (3): ribosomeProfilingQC, scone, standR