RCASPAR
A package for survival time prediction based on a piecewise baseline hazard Cox regression model.
Bioconductor version: 3.23 · Package version: 1.58.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The package is the R-version of the C-based software \bold{CASPAR} (Kaderali,2006: \url{http://bioinformatics.oxfordjournals.org/content/22/12/1495}). It is meant to help predict survival times in the presence of high-dimensional explanatory covariates. The model is a piecewise baseline hazard Cox regression model with an Lq-norm based prior that selects for the most important regression coefficients, and in turn the most relevant covariates for survival analysis. It was primarily tried on gene expression and aCGH data, but can be used on any other type of high-dimensional data and in disciplines other than biology and medicine.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RCASPAR")Details
| Maintainer | Douaa Mugahid <douaa.mugahid@gmail.com>, Lars Kaderali <lars.kaderali@uni-greifswald.de> |
| Author | Douaa Mugahid, Lars Kaderali |
| License | GPL (>=3) |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, Genetics, Proteomics, Software, Visualization, aCGH |
| Package Short Url | https://bioconductor.org/packages/RCASPAR/ |
Citation
From within R, enter citation("RCASPAR"):
Douaa Mugahid, Lars Kaderali. RCASPAR: A package for survival time prediction based on a piecewise baseline hazard Cox regression model. doi:10.18129/B9.bioc.RCASPAR, R package version 1.58.0, https://bioconductor.org/packages/RCASPAR.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | RCASPAR_1.58.0.tar.gz |
| Windows binary (x86_64) | RCASPAR_1.58.0.zip |
| macOS binary (arm64) | RCASPAR_1.58.0.tgz |
| macOS binary (x86_64) | RCASPAR_1.58.0.tgz |