Pviz

This is the released version of Pviz; for the devel version, see Pviz.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Peptide Annotation and Data Visualization using Gviz

Bioconductor version: Release (3.23)

Pviz adapts the Gviz package for protein sequences and data.

Author: Renan Sauteraud, Mike Jiang, Raphael Gottardo

Maintainer: Renan Sauteraud <rsautera at fhcrc.org>

Citation (from within R, enter citation("Pviz")):

Renan Sauteraud, Mike Jiang, Raphael Gottardo. Pviz: Peptide Annotation and Data Visualization using Gviz. doi:10.18129/B9.bioc.Pviz, R package version 1.46.0, https://bioconductor.org/packages/Pviz.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Pviz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Pviz")

The Pviz users guide	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Microarray, Proteomics, Software, Visualization
Version	1.46.0
In Bioconductor since	BioC 3.0 (R-3.1) (12 years)
License	Artistic-2.0
Depends	R (>= 3.0.0), Gviz (>= 1.7.10)
Imports	biovizBase, Biostrings, GenomicRanges, IRanges, data.table, methods
System Requirements
URL

Suggests	knitr, pepDat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	pepStat
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Pviz_1.46.0.tar.gz
Windows Binary (x86_64)	Pviz_1.46.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	Pviz_1.46.0.tgz
macOS Binary (sonoma-arm64)	Pviz_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Pviz
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Pviz
Package Short Url	https://bioconductor.org/packages/Pviz/
Package Downloads Report	Download Stats