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Pviz

Peptide Annotation and Data Visualization using Gviz


Bioconductor version: Release (3.18)

Pviz adapts the Gviz package for protein sequences and data.

Author: Renan Sauteraud, Mike Jiang, Raphael Gottardo

Maintainer: Renan Sauteraud <rsautera at fhcrc.org>

Citation (from within R, enter citation("Pviz")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Pviz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Pviz")
The Pviz users guide PDF R Script
Reference Manual PDF

Details

biocViews Microarray, Proteomics, Software, Visualization
Version 1.36.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License Artistic-2.0
Depends R (>= 3.0.0), Gviz(>= 1.7.10)
Imports biovizBase, Biostrings, GenomicRanges, IRanges, data.table, methods
System Requirements
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Suggests knitr, pepDat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me pepStat
Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Pviz_1.36.0.tar.gz
Windows Binary Pviz_1.36.0.zip (64-bit only)
macOS Binary (x86_64) Pviz_1.36.0.tgz
macOS Binary (arm64) Pviz_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Pviz
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Pviz
Bioc Package Browser https://code.bioconductor.org/browse/Pviz/
Package Short Url https://bioconductor.org/packages/Pviz/
Package Downloads Report Download Stats