PlinkMatrix
This is the released version of PlinkMatrix; for the devel version, see PlinkMatrix.
DelayedArray interface for plink bed files
Bioconductor version: Release (3.23)
This package provides a DelayedArray interface for plink bed files. There is support for interfacing to plink genotype data via RangedSummarizedExperiment. Example data from the GEUVADIS project (internationalgenome.org) are used for demonstration.
Author: Vince Carey [aut, cre] 
, NHGRI U24HG004059 [fnd]
Maintainer: Vince Carey <stvjc at channing.harvard.edu>
citation("PlinkMatrix")):Vince Carey. PlinkMatrix: DelayedArray interface for plink bed files. doi:10.18129/B9.bioc.PlinkMatrix, R package version 1.0.0, https://bioconductor.org/packages/PlinkMatrix.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PlinkMatrix")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PlinkMatrix")| PlinkMatrix: DelayedArray interface to plink bed-type files | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Genetics, Infrastructure, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.23 (R-4.6) (< 6 months) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.1.0), methods, Rcpp, DelayedArray, SummarizedExperiment |
| Imports | BiocFileCache, GenomicRanges, IRanges |
| System Requirements | |
| URL | https://github.com/vjcitn/PlinkMatrix |
| Bug Reports | https://github.com/vjcitn/PlinkMatrix/issues |
See More
| Suggests | knitr, BiocStyle, testthat, rmarkdown, irlba, GenomeInfoDb |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PlinkMatrix_1.0.0.tar.gz |
| Windows Binary (x86_64) | PlinkMatrix_1.0.0.zip |
| macOS Binary (big-sur-x86_64) | PlinkMatrix_1.0.0.tgz |
| macOS Binary (sonoma-arm64) | PlinkMatrix_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PlinkMatrix |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PlinkMatrix |
| Package Short Url | https://bioconductor.org/packages/PlinkMatrix/ |
| Package Downloads Report | Download Stats |