PTMods

This is the released version of PTMods; for the devel version, see PTMods.

All versions

3.24 (devel), 3.23 (release)

Managing Post-Translational Modifications in R

Bioconductor version: Release (3.23)

An interface to the community supported database for amino acid/protein modifications using mass spectrometry.

Author: Laurent Gatto [aut] ORCID: 0000-0002-1520-2268 , Sebastian Gibb [aut] ORCID: 0000-0001-7406-4443 , Guillaume Deflandre [cre] ORCID: 0009-0008-1257-2416

Maintainer: Guillaume Deflandre <guillaume.deflandre at uclouvain.be>

Citation (from within R, enter citation("PTMods")):

Laurent Gatto, Sebastian Gibb. PTMods: Managing Post-Translational Modifications in R. doi:10.18129/B9.bioc.PTMods, R package version 1.0.0, https://bioconductor.org/packages/PTMods.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PTMods")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PTMods")

The PTMods package	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	MassSpectrometry, Proteomics, Software
Version	1.0.0
In Bioconductor since	BioC 3.23 (R-4.6) (< 6 months)
License	GPL-3
Depends	R (>= 4.5.0), methods
Imports
System Requirements
URL	https://github.com/RforMassSpectrometry/PTMods
Bug Reports	https://github.com/RforMassSpectrometry/PTMods/issues

Suggests	xml2, testthat, knitr, BiocStyle, Biostrings
Linking To
Enhances	PSMatch
Depends On Me	PSMatch
Imports Me	MSnbase
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PTMods_1.0.0.tar.gz
Windows Binary (x86_64)	PTMods_1.0.0.zip
macOS Binary (big-sur-x86_64)	PTMods_1.0.0.tgz
macOS Binary (sonoma-arm64)	PTMods_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PTMods
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PTMods
Package Short Url	https://bioconductor.org/packages/PTMods/
Package Downloads Report	Download Stats