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PRObabilistic Pathway Score (PROPS)

Bioconductor version: Release (3.19)

This package calculates probabilistic pathway scores using gene expression data. Gene expression values are aggregated into pathway-based scores using Bayesian network representations of biological pathways.

Author: Lichy Han

Maintainer: Lichy Han <lhan2 at>

Citation (from within R, enter citation("PROPS")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

PRObabilistic Pathway Scores (PROPS) HTML R Script
Reference Manual PDF


biocViews Bayesian, Classification, GeneExpression, Software
Version 1.26.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License GPL-2
Imports bnlearn, reshape2, sva, stats, utils, Biobase
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Suggests knitr, rmarkdown
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Follow Installation instructions to use this package in your R session.

Source Package PROPS_1.26.0.tar.gz
Windows Binary
macOS Binary (x86_64) PROPS_1.26.0.tgz
macOS Binary (arm64) PROPS_1.26.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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