PIUMA
Phenotypes Identification Using Mapper from topological data Analysis
Bioconductor version: Release (3.19)
The PIUMA package offers a tidy pipeline of Topological Data Analysis frameworks to identify and characterize communities in high and heterogeneous dimensional data.
Author: Mattia Chiesa [aut, cre] , Arianna Dagliati [aut] , Alessia Gerbasi [aut] , Giuseppe Albi [aut], Laura Ballarini [aut], Luca Piacentini [aut]
Maintainer: Mattia Chiesa <mattia.chiesa at cardiologicomonzino.it>
citation("PIUMA")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PIUMA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PIUMA")
PIUMA package | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Classification, Clustering, DimensionReduction, GraphAndNetwork, Network, Software |
Version | 1.0.0 |
In Bioconductor since | BioC 3.19 (R-4.4) (< 6 months) |
License | GPL-3 + file LICENSE |
Depends | R (>= 4.3), ggplot2 |
Imports | cluster, umap, tsne, kernlab, vegan, dbscan, igraph, scales, Hmisc, patchwork, grDevices, stats, methods, SummarizedExperiment |
System Requirements | |
URL | https://github.com/BioinfoMonzino/PIUMA |
Bug Reports | https://github.com/BioinfoMonzino/PIUMA/issues |
See More
Suggests | BiocStyle, knitr, testthat, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | PIUMA_1.0.0.tar.gz |
Windows Binary | PIUMA_1.0.0.zip |
macOS Binary (x86_64) | PIUMA_1.0.0.tgz |
macOS Binary (arm64) | PIUMA_1.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/PIUMA |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PIUMA |
Bioc Package Browser | https://code.bioconductor.org/browse/PIUMA/ |
Package Short Url | https://bioconductor.org/packages/PIUMA/ |
Package Downloads Report | Download Stats |