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PANR

Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations

Bioconductor version: 3.23 · Package version: 1.58.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

3.24 (devel), 3.23 (release)

This package provides S4 classes and methods for inferring functional gene networks with edges encoding posterior beliefs of gene association types and nodes encoding perturbation effects.

DOI: 10.18129/B9.bioc.PANR

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PANR")

Details

MaintainerXin Wang <xin_wang@hms.harvard.edu>
AuthorXin Wang <xin_wang@hms.harvard.edu>
LicenseArtistic-2.0
Source branchRELEASE_3_23
Build report Bioconductor build system, r-universe
biocViewsCellBasedAssays, Clustering, GraphAndNetwork, ImmunoOncology, NetworkInference, Software, Visualization
Package Short Url https://bioconductor.org/packages/PANR/

Citation

From within R, enter citation("PANR"):

Xin Wang. PANR: Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations. doi:10.18129/B9.bioc.PANR, R package version 1.58.0, https://bioconductor.org/packages/PANR.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagePANR_1.58.0.tar.gz
Windows binary (x86_64)PANR_1.58.0.zip
macOS binary (arm64)PANR_1.58.0.tgz
macOS binary (x86_64)PANR_1.58.0.tgz
Dependencies

Depends: R (>= 2.14), igraph

Imports: graphics, grDevices, MASS, methods, pvclust, stats, utils, RedeR

Suggests: snow