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OrderedList

Similarities of Ordered Gene Lists


Bioconductor version: Release (3.18)

Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.

Author: Xinan Yang, Stefanie Scheid, Claudio Lottaz

Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>

Citation (from within R, enter citation("OrderedList")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OrderedList")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OrderedList")
Similarities of Ordered Gene Lists PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, Microarray, MultipleComparison, Software
Version 1.74.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License GPL (>= 2)
Depends R (>= 3.6.1), Biobase, twilight
Imports methods
System Requirements
URL http://compdiag.molgen.mpg.de/software/OrderedList.shtml
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OrderedList_1.74.0.tar.gz
Windows Binary OrderedList_1.74.0.zip (64-bit only)
macOS Binary (x86_64) OrderedList_1.74.0.tgz
macOS Binary (arm64) OrderedList_1.74.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OrderedList
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OrderedList
Bioc Package Browser https://code.bioconductor.org/browse/OrderedList/
Package Short Url https://bioconductor.org/packages/OrderedList/
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