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OncoScore

A tool to identify potentially oncogenic genes


Bioconductor version: Release (3.18)

OncoScore is a tool to measure the association of genes to cancer based on citation frequencies in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries.

Author: Luca De Sano [cre, aut] , Carlo Gambacorti Passerini [ctb], Rocco Piazza [ctb], Daniele Ramazzotti [aut] , Roberta Spinelli [ctb]

Maintainer: Luca De Sano <luca.desano at gmail.com>

Citation (from within R, enter citation("OncoScore")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OncoScore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OncoScore")
Introduction HTML R Script
Running OncoScore HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews BiomedicalInformatics, Software
Version 1.30.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License file LICENSE
Depends R (>= 4.1.0)
Imports biomaRt, grDevices, graphics, utils, methods
System Requirements
URL https://github.com/danro9685/OncoScore
Bug Reports https://github.com/danro9685/OncoScore
See More
Suggests BiocGenerics, BiocStyle, knitr, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OncoScore_1.30.0.tar.gz
Windows Binary OncoScore_1.30.0.zip
macOS Binary (x86_64) OncoScore_1.30.0.tgz
macOS Binary (arm64) OncoScore_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OncoScore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OncoScore
Bioc Package Browser https://code.bioconductor.org/browse/OncoScore/
Package Short Url https://bioconductor.org/packages/OncoScore/
Package Downloads Report Download Stats