Omixer
Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies
Bioconductor version: Release (3.19)
Omixer - an Bioconductor package for multivariate and reproducible sample randomization, which ensures optimal sample distribution across batches with well-documented methods. It outputs lab-friendly sample layouts, reducing the risk of sample mixups when manually pipetting randomized samples.
Author: Lucy Sinke [cre, aut]
Maintainer: Lucy Sinke <l.j.sinke at lumc.nl>
citation("Omixer")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Omixer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Omixer")
my-vignette | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | DataRepresentation, ExperimentalDesign, QualityControl, Software, Visualization |
Version | 1.14.0 |
In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
License | MIT + file LICENSE |
Depends | R (>= 4.0.0) |
Imports | dplyr, ggplot2, forcats, tibble, gridExtra, magrittr, readr, tidyselect, grid, stats, stringr |
System Requirements | |
URL | |
Bug Reports | https://github.com/molepi/Omixer/issues |
See More
Suggests | knitr, rmarkdown, BiocStyle, magick, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | Omixer_1.14.0.tar.gz |
Windows Binary | Omixer_1.14.0.zip |
macOS Binary (x86_64) | Omixer_1.14.0.tgz |
macOS Binary (arm64) | Omixer_1.14.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Omixer |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Omixer |
Bioc Package Browser | https://code.bioconductor.org/browse/Omixer/ |
Package Short Url | https://bioconductor.org/packages/Omixer/ |
Package Downloads Report | Download Stats |