OSCA.intro
This is the released version of OSCA.intro; for the devel version, see OSCA.intro.
Introduction to OSCA
Bioconductor version: Release (3.23)
Deploys the introduction to the "Orchestrating Single Cell Analysis with Bioconductor" book. This describes how to install R and Bioconductor packages, links out to some resources to learn R, describes how to load datasets into an R session, provides an overview of the SingleCellExperiment class, and performs a "quick start" demonstration for basic single-cell RNA-seq analyses. It is intended for readers with little-to-no computational background who are just getting started with analyses in R.
Author: Robert Amezquita [aut], Aaron Lun [aut], Stephanie Hicks [aut], Raphael Gottardo [aut], Ludwig Geistlinger [cre]
Maintainer: Ludwig Geistlinger <ludwig_geistlinger at hms.harvard.edu>
citation("OSCA.intro")):Robert Amezquita, Aaron Lun, Stephanie Hicks, Raphael Gottardo. OSCA.intro: Introduction to OSCA. doi:10.18129/B9.bioc.OSCA.intro, R package version 1.20.0, https://bioconductor.org/packages/OSCA.intro.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("OSCA.intro")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| No vignettes available | |
| Reference Manual |
Details
| biocViews | ImmunoOncologyWorkflow, SingleCellWorkflow, Software, Workflow |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.23 (R-4.6) (< 6 months) |
| License | CC BY 4.0 |
| Depends | batchelor, BiocFileCache, BiocManager, bluster, DropletTestFiles, DropletUtils, gridExtra, knitr, LoomExperiment, R.utils, readxl, rebook, rmarkdown, rtracklayer, scater, scran, scRNAseq, scuttle, SingleCellExperiment, uwot, zellkonverter |
| Imports | |
| System Requirements | |
| URL | https://github.com/OSCA-source/OSCA.intro |
See More
| Suggests | BiocManager, rmarkdown, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | OSCA, rebook |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/OSCA.intro |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OSCA.intro |
| Package Short Url | https://bioconductor.org/packages/OSCA.intro/ |
| Package Downloads Report | Download Stats |