OSCA

This is the released version of OSCA; for the devel version, see OSCA.

All versions

3.24 (devel), 3.23 (release)

Orchestrating Single Cell Analysis with Bioconductor

Bioconductor version: Release (3.23)

Online book for orchestrating single cell analysis with Bioconductor. Contains plenty of worked examples, theoretical background and some philosophical discussions on the nature of single-cell data analysis.

Author: Robert Amezquita [aut], Aaron Lun [aut], Stephanie Hicks [aut], Raphael Gottardo [aut], Alan O'Callaghan [cre]

Maintainer: Alan O'Callaghan <alan.ocallaghan at outlook.com>

Citation (from within R, enter citation("OSCA")):

Robert Amezquita, Aaron Lun, Stephanie Hicks, Raphael Gottardo. OSCA: Orchestrating Single Cell Analysis with Bioconductor. doi:10.18129/B9.bioc.OSCA, R package version 1.22.0, https://bioconductor.org/packages/OSCA.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OSCA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OSCA")

Link to book	HTML
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ImmunoOncologyWorkflow, SingleCellWorkflow, Software, Workflow
Version	1.22.0
In Bioconductor since	BioC 3.23 (R-4.6) (< 6 months)
License	CC BY 4.0
Depends	BiocStyle, knitr, rebook, rmarkdown
Imports
System Requirements
URL	https://github.com/Bioconductor/OrchestratingSingleCellAnalysis

Suggests	OSCA.intro, OSCA.basic, OSCA.advanced, OSCA.workflows, OSCA.multisample
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/OSCA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/OSCA
Package Short Url	https://bioconductor.org/packages/OSCA/
Package Downloads Report	Download Stats