Bioconductor Developer Survey 2026 Now Open!

OPWeight

This is the released version of OPWeight; for the devel version, see OPWeight.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

Optimal p-value weighting with independent information


Bioconductor version: Release (3.23)

This package perform weighted-pvalue based multiple hypothesis test and provides corresponding information such as ranking probability, weight, significant tests, etc . To conduct this testing procedure, the testing method apply a probabilistic relationship between the test rank and the corresponding test effect size.

Author: Mohamad Hasan [aut, cre], Paul Schliekelman [aut]

Maintainer: Mohamad Hasan <shakilmohamad7 at gmail.com>

Citation (from within R, enter citation("OPWeight")):

Mohamad Hasan, Paul Schliekelman. OPWeight: Optimal p-value weighting with independent information. doi:10.18129/B9.bioc.OPWeight, R package version 1.34.0, https://bioconductor.org/packages/OPWeight.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OPWeight")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OPWeight")
"Introduction to OPWeight" HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews BiomedicalInformatics, ImmunoOncology, MultipleComparison, RNASeq, Regression, SNP, Software
Version1.34.0
In Bioconductor sinceBioC 3.6 (R-3.4) (9 years)
License Artistic-2.0
Depends R (>= 3.4.0)
Imports graphics, qvalue, MASS, tibble, stats
System Requirements
URLhttps://github.com/mshasan/OPWeight
See More
Suggests airway, BiocStyle, cowplot, DESeq2, devtools, ggplot2, gridExtra, knitr, Matrix, rmarkdown, scales, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OPWeight_1.34.0.tar.gz
Windows Binary (x86_64) OPWeight_1.34.0.zip
macOS Binary (big-sur-x86_64) OPWeight_1.34.0.tgz
macOS Binary (sonoma-arm64) OPWeight_1.34.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/OPWeight
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/OPWeight
Package Short Url https://bioconductor.org/packages/OPWeight/
Package Downloads ReportDownload Stats