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OPWeight

Optimal p-value weighting with independent information


Bioconductor version: Release (3.18)

This package perform weighted-pvalue based multiple hypothesis test and provides corresponding information such as ranking probability, weight, significant tests, etc . To conduct this testing procedure, the testing method apply a probabilistic relationship between the test rank and the corresponding test effect size.

Author: Mohamad Hasan [aut, cre], Paul Schliekelman [aut]

Maintainer: Mohamad Hasan <shakilmohamad7 at gmail.com>

Citation (from within R, enter citation("OPWeight")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OPWeight")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OPWeight")
Introduction to OPWeight HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BiomedicalInformatics, ImmunoOncology, MultipleComparison, RNASeq, Regression, SNP, Software
Version 1.24.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License Artistic-2.0
Depends R (>= 3.4.0)
Imports graphics, qvalue, MASS, tibble, stats
System Requirements
URL https://github.com/mshasan/OPWeight
See More
Suggests airway, BiocStyle, cowplot, DESeq2, devtools, ggplot2, gridExtra, knitr, Matrix, rmarkdown, scales, testthat
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OPWeight_1.24.0.tar.gz
Windows Binary OPWeight_1.24.0.zip (64-bit only)
macOS Binary (x86_64) OPWeight_1.24.0.tgz
macOS Binary (arm64) OPWeight_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OPWeight
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OPWeight
Bioc Package Browser https://code.bioconductor.org/browse/OPWeight/
Package Short Url https://bioconductor.org/packages/OPWeight/
Package Downloads Report Download Stats