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OLIN

Optimized local intensity-dependent normalisation of two-color microarrays


Bioconductor version: Release (3.18)

Functions for normalisation of two-color microarrays by optimised local regression and for detection of artefacts in microarray data

Author: Matthias Futschik <mfutschik at ualg.pt>

Maintainer: Matthias Futschik <mfutschik at ualg.pt>

Citation (from within R, enter citation("OLIN")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OLIN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OLIN")
Introduction to OLIN PDF R Script
Reference Manual PDF

Details

biocViews Microarray, Preprocessing, QualityControl, Software, TwoChannel, Visualization
Version 1.80.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License GPL-2
Depends R (>= 2.10), methods, locfit, marray
Imports graphics, grDevices, limma, marray, methods, stats
System Requirements
URL http://olin.sysbiolab.eu
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Suggests convert
Linking To
Enhances
Depends On Me OLINgui
Imports Me OLINgui
Suggests Me maigesPack
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OLIN_1.80.0.tar.gz
Windows Binary OLIN_1.80.0.zip
macOS Binary (x86_64) OLIN_1.80.0.tgz
macOS Binary (arm64) OLIN_1.80.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OLIN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OLIN
Bioc Package Browser https://code.bioconductor.org/browse/OLIN/
Package Short Url https://bioconductor.org/packages/OLIN/
Package Downloads Report Download Stats