MsBackendMsp
Mass Spectrometry Data Backend for NIST msp Files
Bioconductor version: Release (3.19)
Mass spectrometry (MS) data backend supporting import and handling of MS/MS spectra from NIST MSP Format (msp) files. Import of data from files with different MSP *flavours* is supported. Objects from this package add support for MSP files to Bioconductor's Spectra package. This package is thus not supposed to be used without the Spectra package that provides a complete infrastructure for MS data handling.
Author: Neumann Steffen [aut] , Johannes Rainer [aut, cre] , Michael Witting [ctb]
Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>
citation("MsBackendMsp")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MsBackendMsp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MsBackendMsp")
MsBackendMsp | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
Version | 1.8.0 |
In Bioconductor since | BioC 3.15 (R-4.2) (2.5 years) |
License | Artistic-2.0 |
Depends | R (>= 4.1.0), Spectra(>= 1.5.14) |
Imports | ProtGenerics(>= 1.35.3), BiocParallel, S4Vectors, IRanges, MsCoreUtils, methods, stats |
System Requirements | |
URL | https://github.com/RforMassSpectrometry/MsBackendMsp |
Bug Reports | https://github.com/RforMassSpectrometry/MsBackendMsp/issues |
See More
Suggests | testthat, knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MsBackendMsp_1.8.0.tar.gz |
Windows Binary | MsBackendMsp_1.8.0.zip |
macOS Binary (x86_64) | MsBackendMsp_1.8.0.tgz |
macOS Binary (arm64) | MsBackendMsp_1.8.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MsBackendMsp |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MsBackendMsp |
Bioc Package Browser | https://code.bioconductor.org/browse/MsBackendMsp/ |
Package Short Url | https://bioconductor.org/packages/MsBackendMsp/ |
Package Downloads Report | Download Stats |