MsBackendMgf

This is the released version of MsBackendMgf; for the devel version, see MsBackendMgf.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13

Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files

Bioconductor version: Release (3.23)

Mass spectrometry (MS) data backend supporting import and export of MS/MS spectra data from Mascot Generic Format (mgf) files. Objects defined in this package are supposed to be used with the Spectra Bioconductor package. This package thus adds mgf file support to the Spectra package.

Author: RforMassSpectrometry Package Maintainer [cre], Laurent Gatto [aut] ORCID: 0000-0002-1520-2268 , Johannes Rainer [aut] ORCID: 0000-0002-6977-7147 , Sebastian Gibb [aut] ORCID: 0000-0001-7406-4443 , Michael Witting [ctb] ORCID: 0000-0002-1462-4426 , Adriano Rutz [ctb] ORCID: 0000-0003-0443-9902 , Corey Broeckling [ctb] ORCID: 0000-0002-6158-827X

Maintainer: RforMassSpectrometry Package Maintainer <maintainer at rformassspectrometry.org>

Citation (from within R, enter citation("MsBackendMgf")):

Laurent Gatto, Johannes Rainer, Sebastian Gibb. MsBackendMgf: Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files. doi:10.18129/B9.bioc.MsBackendMgf, R package version 1.20.1, https://bioconductor.org/packages/MsBackendMgf.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsBackendMgf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsBackendMgf")

Description and usage of MsBackendMgf	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software
Version	1.20.1
In Bioconductor since	BioC 3.13 (R-4.1) (5.5 years)
License	Artistic-2.0
Depends	R (>= 4.0), Spectra (>= 1.5.14)
Imports	ProtGenerics (>= 1.35.3), BiocParallel, S4Vectors, IRanges, MsCoreUtils, methods, stats, data.table
System Requirements
URL	https://github.com/RforMassSpectrometry/MsBackendMgf
Bug Reports	https://github.com/RforMassSpectrometry/MsBackendMgf/issues

Suggests	testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	CompoundDb, MsBackendRawFileReader, SpectriPy, xcms
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MsBackendMgf_1.20.1.tar.gz
Windows Binary (x86_64)	MsBackendMgf_1.20.1.zip
macOS Binary (big-sur-x86_64)	MsBackendMgf_1.20.1.tgz
macOS Binary (sonoma-arm64)	MsBackendMgf_1.20.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MsBackendMgf
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MsBackendMgf
Package Short Url	https://bioconductor.org/packages/MsBackendMgf/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.23	Source Archive