MsBackendMassbank
Mass Spectrometry Data Backend for MassBank record Files
Bioconductor version: 3.23 · Package version: 1.20.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Mass spectrometry (MS) data backend supporting import and export of MS/MS library spectra from MassBank record files. Different backends are available that allow handling of data in plain MassBank text file format or allow also to interact directly with MassBank SQL databases. Objects from this package are supposed to be used with the Spectra Bioconductor package. This package thus adds MassBank support to the Spectra package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MsBackendMassbank")Details
| Maintainer | RforMassSpectrometry Package Maintainer <maintainer@rformassspectrometry.org> |
| Author | RforMassSpectrometry Package Maintainer [cre], Michael Witting [aut] (ORCID: <https://orcid.org/0000-0002-1462-4426>), Johannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Michael Stravs [ctb] |
| License | Artistic-2.0 |
| URL | https://github.com/RforMassSpectrometry/MsBackendMassbank |
| Bug Reports | https://github.com/RforMassSpectrometry/MsBackendMassbank/issues |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Infrastructure, MassSpectrometry, Metabolomics, Software |
| Package Short Url | https://bioconductor.org/packages/MsBackendMassbank/ |
Citation
From within R, enter citation("MsBackendMassbank"):
Michael Witting, Johannes Rainer. MsBackendMassbank: Mass Spectrometry Data Backend for MassBank record Files. doi:10.18129/B9.bioc.MsBackendMassbank, R package version 1.20.0, https://bioconductor.org/packages/MsBackendMassbank.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | MsBackendMassbank_1.20.0.tar.gz |
| Windows binary (x86_64) | MsBackendMassbank_1.20.0.zip |
| macOS binary (arm64) | MsBackendMassbank_1.20.0.tgz |
| macOS binary (x86_64) | MsBackendMassbank_1.20.0.tgz |
Dependencies
Depends: R (>= 4.0), Spectra (>= 1.21.5)
Imports: BiocParallel, S4Vectors, IRanges, methods, ProtGenerics (>= 1.35.3), MsCoreUtils, DBI, utils
Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19), RSQLite, rmarkdown