MouseFM

This is the released version of MouseFM; for the devel version, see MouseFM.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12

In-silico methods for genetic finemapping in inbred mice

Bioconductor version: Release (3.23)

This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).

Author: Matthias Munz [aut, cre] ORCID: 0000-0002-4728-3357 , Inken Wohlers [aut] ORCID: 0000-0003-4004-0464 , Hauke Busch [aut] ORCID: 0000-0003-4763-4521

Maintainer: Matthias Munz <matthias.munz at gmx.de>

Citation (from within R, enter citation("MouseFM")):

Matthias Munz, Inken Wohlers, Hauke Busch. MouseFM: In-silico methods for genetic finemapping in inbred mice. doi:10.18129/B9.bioc.MouseFM, R package version 1.22.0, https://bioconductor.org/packages/MouseFM.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MouseFM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseFM")

Fetch	HTML	R Script
Finemapping	HTML	R Script
Prioritization	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BiomedicalInformatics, FunctionalGenomics, GenePrediction, GeneTarget, Genetics, GenomicVariation, MathematicalBiology, MultipleComparison, PatternLogic, SNP, Software, SystemsBiology, VariantAnnotation
Version	1.22.0
In Bioconductor since	BioC 3.12 (R-4.0) (6 years)
License	GPL-3
Depends	R (>= 4.0.0)
Imports	httr, curl, GenomicRanges, dplyr, ggplot2, reshape2, scales, gtools, tidyr, data.table, jsonlite, rlist, Seqinfo, methods, biomaRt, stats, IRanges
System Requirements
URL
Bug Reports	https://github.com/matmu/MouseFM/issues

Suggests	BiocStyle, testthat, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MouseFM_1.22.0.tar.gz
Windows Binary (x86_64)	MouseFM_1.22.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	MouseFM_1.22.0.tgz
macOS Binary (sonoma-arm64)	MouseFM_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MouseFM
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MouseFM
Package Short Url	https://bioconductor.org/packages/MouseFM/
Package Downloads Report	Download Stats