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MouseFM

In-silico methods for genetic finemapping in inbred mice


Bioconductor version: Release (3.18)

This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).

Author: Matthias Munz [aut, cre] , Inken Wohlers [aut] , Hauke Busch [aut]

Maintainer: Matthias Munz <matthias.munz at gmx.de>

Citation (from within R, enter citation("MouseFM")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MouseFM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MouseFM")
Fetch HTML R Script
Finemapping HTML R Script
Prioritization HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews BiomedicalInformatics, FunctionalGenomics, GenePrediction, GeneTarget, Genetics, GenomicVariation, MathematicalBiology, MultipleComparison, PatternLogic, SNP, Software, SystemsBiology, VariantAnnotation
Version 1.12.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License GPL-3
Depends R (>= 4.0.0)
Imports httr, curl, GenomicRanges, dplyr, ggplot2, reshape2, scales, gtools, tidyr, data.table, jsonlite, rlist, GenomeInfoDb, methods, biomaRt, stats, IRanges
System Requirements
URL
Bug Reports https://github.com/matmu/MouseFM/issues
See More
Suggests BiocStyle, testthat, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MouseFM_1.12.0.tar.gz
Windows Binary MouseFM_1.12.0.zip
macOS Binary (x86_64) MouseFM_1.12.0.tgz
macOS Binary (arm64) MouseFM_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MouseFM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MouseFM
Bioc Package Browser https://code.bioconductor.org/browse/MouseFM/
Package Short Url https://bioconductor.org/packages/MouseFM/
Package Downloads Report Download Stats