ModCon
This is the released version of ModCon; for the devel version, see ModCon.
All Bioconductor versions of ModCon
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13
Modifying splice site usage by changing the mRNP code, while maintaining the genetic code
Bioconductor version: 3.23 · Package version: 1.20.0
Collection of functions to calculate a nucleotide sequence surrounding for splice donors sites to either activate or repress donor usage. The proposed alternative nucleotide sequence encodes the same amino acid and could be applied e.g. in reporter systems to silence or activate cryptic splice donor sites.
Author: Johannes Ptok [aut, cre] 
Maintainer: Johannes Ptok <Johannes.Ptok at posteo.de>
Citation
From within R, enter citation("ModCon"):
Johannes Ptok. ModCon: Modifying splice site usage by changing the mRNP code, while maintaining the genetic code. doi:10.18129/B9.bioc.ModCon, R package version 1.20.0, https://bioconductor.org/packages/ModCon.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ModCon")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.20.0 |
| License | GPL-3 + file LICENSE |
| URL | https://github.com/caggtaagtat/ModCon |
| System Requirements | Perl |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.13 (R-4.1) (5 years) |
| Downloads rank | 2186 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | AlternativeSplicing, FunctionalGenomics, Software |
| Package Short Url | https://bioconductor.org/packages/ModCon/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ModCon")| Designing SD context with ModCon | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | ModCon_1.20.0.tar.gz |
| Windows binary (x86_64) | ModCon_1.20.0.zip |
| macOS binary (arm64) | ModCon_1.20.0.tgz |
| macOS binary (x86_64) | ModCon_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ModCon |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ModCon |
| Package Downloads Report | Download Stats |
Dependencies
Depends: data.table, parallel, utils, stats, R (>= 4.1)
Suggests: testthat, knitr, rmarkdown, dplyr, shinycssloaders, shiny, shinyFiles, shinydashboard, shinyjs