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MethTargetedNGS

Perform Methylation Analysis on Next Generation Sequencing Data


Bioconductor version: Release (3.18)

Perform step by step methylation analysis of Next Generation Sequencing data.

Author: Muhammad Ahmer Jamil with Contribution of Prof. Holger Frohlich and Priv.-Doz. Dr. Osman El-Maarri

Maintainer: Muhammad Ahmer Jamil <engr.ahmerjamil at gmail.com>

Citation (from within R, enter citation("MethTargetedNGS")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MethTargetedNGS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethTargetedNGS")
Introduction to MethTargetedNGS PDF R Script
Reference Manual PDF

Details

biocViews Alignment, DataImport, Genetics, ResearchField, SequenceMatching, Sequencing, Software
Version 1.34.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License Artistic-2.0
Depends R (>= 3.1.2), stringr, seqinr, gplots, Biostrings
Imports
System Requirements HMMER3
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MethTargetedNGS_1.34.0.tar.gz
Windows Binary MethTargetedNGS_1.34.0.zip
macOS Binary (x86_64) MethTargetedNGS_1.34.0.tgz
macOS Binary (arm64) MethTargetedNGS_1.34.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MethTargetedNGS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MethTargetedNGS
Bioc Package Browser https://code.bioconductor.org/browse/MethTargetedNGS/
Package Short Url https://bioconductor.org/packages/MethTargetedNGS/
Package Downloads Report Download Stats