To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MetaboSignal")

In most cases, you don't need to download the package archive at all.

MetaboSignal

 

   

MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways

Bioconductor version: Release (3.4)

MetaboSignal is an R package that allows merging, analyzing and customizing metabolic and signaling KEGG pathways. It is a network-based approach designed to explore the topological relationship between genes (signaling- or enzymatic-genes) and metabolites, representing a powerful tool to investigate the genetic landscape and regulatory networks of metabolic phenotypes.

Author: Andrea Rodriguez-Martinez <andrea.rodriguez-martinez13 at imperial.ac.uk>, Rafael Ayala <r.ayala14 at imperial.ac.uk>, Joram M. Posma <j.posma11 at imperial.ac.uk>, Ana L. Neves <ana.luisa.neves14 at imperial.ac.uk>, Marc-Emmanuel Dumas <m.dumas at imperial.ac.uk>

Maintainer: Andrea Rodriguez-Martinez <andrea.rodriguez-martinez13 at imperial.ac.uk>, Rafael Ayala <r.ayala14 at imperial.ac.uk>

Citation (from within R, enter citation("MetaboSignal")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MetaboSignal")

Documentation

HTML R Script MetaboSignal
PDF   Reference Manual
Text   NEWS

Details

biocViews GeneSignaling, GeneTarget, GraphAndNetwork, KEGG, Network, Pathways, Reactome, Software
Version 1.4.0
In Bioconductor since BioC 3.4 (R-3.3) (< 6 months)
License GPL-3
Depends R (>= 3.3)
Imports KEGGgraph, mygene, hpar, org.Hs.eg.db, igraph, RCurl, biomaRt, KEGGREST, AnnotationDbi, stats, graphics, utils
LinkingTo
Suggests RUnit, BiocGenerics, knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MetaboSignal_1.4.0.tar.gz
Windows Binary MetaboSignal_1.4.0.zip
Mac OS X 10.9 (Mavericks) MetaboSignal_1.4.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/MetaboSignal/tree/release-3.4
Package Short Url http://bioconductor.org/packages/MetaboSignal/
Package Downloads Report Download Stats

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