MetaboSignal
MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways
Bioconductor version: 3.23 · Package version: 1.42.1
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
MetaboSignal is an R package that allows merging, analyzing and customizing metabolic and signaling KEGG pathways. It is a network-based approach designed to explore the topological relationship between genes (signaling- or enzymatic-genes) and metabolites, representing a powerful tool to investigate the genetic landscape and regulatory networks of metabolic phenotypes.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MetaboSignal")Details
| Maintainer | Andrea Rodriguez-Martinez <andrea.rodriguez-martinez13@imperial.ac.uk>, Rafael Ayala <rafaelayalahernandez@gmail.com> |
| Author | Andrea Rodriguez-Martinez, Rafael Ayala, Joram M. Posma, Ana L. Neves, Maryam Anwar, Jeremy K. Nicholson, Marc-Emmanuel Dumas |
| License | GPL-3 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneSignaling, GeneTarget, GraphAndNetwork, KEGG, Network, Pathways, Reactome, Software |
| Package Short Url | https://bioconductor.org/packages/MetaboSignal/ |
Citation
From within R, enter citation("MetaboSignal"):
Andrea Rodriguez-Martinez, Rafael Ayala, Joram M. Posma, Ana L. Neves, Maryam Anwar, Jeremy K. Nicholson, Marc-Emmanuel Dumas. MetaboSignal: MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways. doi:10.18129/B9.bioc.MetaboSignal, R package version 1.42.1, https://bioconductor.org/packages/MetaboSignal.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | MetaboSignal_1.42.1.tar.gz |
| Windows binary (x86_64) | MetaboSignal_1.42.1.zip |
| macOS binary (arm64) | MetaboSignal_1.42.1.tgz |
| macOS binary (x86_64) | MetaboSignal_1.42.1.tgz |
Dependencies
Depends: R (>= 3.3)
Imports: KEGGgraph, hpar, igraph, RCurl, KEGGREST, EnsDb.Hsapiens.v75, stats, graphics, utils, org.Hs.eg.db, biomaRt, AnnotationDbi, MWASTools, mygene
Suggests: RUnit, BiocGenerics, knitr, BiocStyle, rmarkdown