MetID

This is the released version of MetID; for the devel version, see MetID.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8

Network-based prioritization of putative metabolite IDs

Bioconductor version: Release (3.23)

This package uses an innovative network-based approach that will enhance our ability to determine the identities of significant ions detected by LC-MS.

Author: Zhenzhi Li <zzrickli at gmail.com>

Maintainer: Zhenzhi Li <zzrickli at gmail.com>

Citation (from within R, enter citation("MetID")):

Zhenzhi Li. MetID: Network-based prioritization of putative metabolite IDs. doi:10.18129/B9.bioc.MetID, R package version 1.30.0, https://bioconductor.org/packages/MetID.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MetID")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetID")

Introduction to MetID	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AssayDomain, BiologicalQuestion, Infrastructure, KEGG, Network, ResearchField, Software, StatisticalMethod, Technology, WorkflowStep
Version	1.30.0
In Bioconductor since	BioC 3.8 (R-3.5) (8 years)
License	Artistic-2.0
Depends	R (>= 3.5)
Imports	utils (>= 3.3.1), stats (>= 3.4.2), devtools (>= 1.13.0), stringr (>= 1.3.0), Matrix (>= 1.2-12), igraph (>= 1.2.1), ChemmineR (>= 2.30.2)
System Requirements
URL	https://github.com/ressomlab/MetID

Suggests	knitr (>= 1.19), rmarkdown (>= 1.8)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MetID_1.30.0.tar.gz
Windows Binary (x86_64)	MetID_1.30.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	MetID_1.30.0.tgz
macOS Binary (sonoma-arm64)	MetID_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MetID
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MetID
Package Short Url	https://bioconductor.org/packages/MetID/
Package Downloads Report	Download Stats