To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MetCirc")

In most cases, you don't need to download the package archive at all.

MetCirc

 

Navigating mass spectral similarity in high-resolution MS/MS metabolomics data

Bioconductor version: Release (3.5)

MetCirc comprises a workflow to interactively explore high-resolution MS/MS metabolomics data: create an MSP object, a format for MS/MS library data, bin m/z values of precursors, calculate similarity between precursors based on the normalised dot product and visualise similarities in a circular layout. Within the interactive framework the user can annotate MS/MS features based on their similarity to (known) related MS/MS features.

Author: Thomas Naake <thomasnaake at googlemail.com> and Emmanuel Gaquerel <emmanuel.gaquerel at cos.uni-heidelberg.de>

Maintainer: Thomas Naake <thomasnaake at googlemail.com>

Citation (from within R, enter citation("MetCirc")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MetCirc")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetCirc")

 

PDF R Script Workflow for Metabolomics
PDF   Reference Manual
Text   NEWS

Details

biocViews MassSpectrometry, Metabolomics, Software, Visualization
Version 1.2.0
In Bioconductor since BioC 3.4 (R-3.3) (1 year)
License GPL-2
Depends R (>= 3.3), amap (>= 0.8), circlize (>= 0.3.9), graphics (>= 3.3), grDevices (>= 3.3), methods (>= 3.3), scales (>= 0.3.0), shiny (>= 1.0.0), stats (>= 3.3)
Imports
LinkingTo
Suggests BiocGenerics, knitr (>= 1.11)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MetCirc_1.2.0.tar.gz
Windows Binary MetCirc_1.2.0.zip
Mac OS X 10.11 (El Capitan) MetCirc_1.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/MetCirc/tree/release-3.5
Package Short Url http://bioconductor.org/packages/MetCirc/
Package Downloads Report Download Stats

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