MOGAMUN

DOI: 10.18129/B9.bioc.MOGAMUN    

MOGAMUN: A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks

Bioconductor version: Release (3.12)

MOGAMUN is a multi-objective genetic algorithm that identifies active modules in a multiplex biological network. This allows analyzing different biological networks at the same time. MOGAMUN is based on NSGA-II (Non-Dominated Sorting Genetic Algorithm, version II), which we adapted to work on networks.

Author: Elva-María Novoa-del-Toro [aut, cre]

Maintainer: Elva-María Novoa-del-Toro <elva.novoa at inserm.fr>

Citation (from within R, enter citation("MOGAMUN")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MOGAMUN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MOGAMUN")

 

HTML R Script Finding active modules with MOGAMUN
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews BiomedicalInformatics, Clustering, DifferentialExpression, GraphAndNetwork, Network, Software, SystemsBiology, Transcriptomics
Version 1.0.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License GPL-3 + file LICENSE
Depends
Imports stats, utils, RCy3, stringr, graphics, grDevices, RUnit, nsga2R, BiocParallel, igraph
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL 'https://www.biorxiv.org/content/10.1101/2020.05.25.114215v1'
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MOGAMUN_1.0.0.tar.gz
Windows Binary MOGAMUN_1.0.0.zip
macOS 10.13 (High Sierra) MOGAMUN_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MOGAMUN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MOGAMUN
Package Short Url https://bioconductor.org/packages/MOGAMUN/
Package Downloads Report Download Stats

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