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MMUPHin

This is the released version of MMUPHin; for the devel version, see MMUPHin.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10

Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies

DOI: 10.18129/B9.bioc.MMUPHin

Bioconductor version: Release (3.23)

MMUPHin is an R package for meta-analysis tasks of microbiome cohorts. It has function interfaces for: a) covariate-controlled batch- and cohort effect adjustment, b) meta-analysis differential abundance testing, c) meta-analysis unsupervised discrete structure (clustering) discovery, and d) meta-analysis unsupervised continuous structure discovery.

Author: Siyuan Ma

Maintainer: Siyuan MA <syma.research at gmail.com>

Citation (from within R, enter citation("MMUPHin")):

Siyuan Ma. MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies. doi:10.18129/B9.bioc.MMUPHin, R package version 2.0.0, https://bioconductor.org/packages/MMUPHin.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MMUPHin")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MMUPHin")

Details

Package Archives

Follow Installation instructions to use this package in your R session.