To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MEAL")

In most cases, you don't need to download the package archive at all.

MEAL

 

Perform methylation analysis

Bioconductor version: Release (3.5)

Package to integrate methylation and expression data. It can also perform methylation or expression analysis alone. Several plotting functionalities are included as well as a new region analysis based on redundancy analysis. Effect of SNPs on a region can also be estimated.

Author: Carlos Ruiz-Arenas [aut, cre], Carles Hernandez-Ferrer [aut], Juan R. González [aut]

Maintainer: Carlos Ruiz-Arenas <carlos.ruiz at isglobal.org>

Citation (from within R, enter citation("MEAL")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MEAL")

Documentation

HTML R Script Introduction to MEAL
HTML R Script MEAL case example
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, Microarray, Software, WholeGenome
Version 1.6.0
In Bioconductor since BioC 3.2 (R-3.2) (2 years)
License Artistic-2.0
Depends R (>= 3.2.0), Biobase, MultiDataSet
Imports GenomicRanges, SNPassoc, limma, DMRcate, snpStats, vegan, BiocGenerics, minfi, IRanges, S4Vectors, methods, doParallel, parallel, ggplot2 (>= 2.0.0), sva, permute
LinkingTo
Suggests testthat, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylation450kanno.ilmn12.hg19, knitr, minfiData, MEALData, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MEAL_1.6.0.tar.gz
Windows Binary MEAL_1.6.0.zip
Mac OS X 10.11 (El Capitan) MEAL_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MEAL
Package Short Url http://bioconductor.org/packages/MEAL/
Package Downloads Report Download Stats

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