MBASED
Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection
Bioconductor version: 3.23 · Package version: 1.46.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The package implements MBASED algorithm for detecting allele-specific gene expression from RNA count data, where allele counts at individual loci (SNVs) are integrated into a gene-specific measure of ASE, and utilizes simulations to appropriately assess the statistical significance of observed ASE.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MBASED")Details
| Maintainer | Oleg Mayba <mayba.oleg@gene.com> |
| Author | Oleg Mayba, Houston Gilbert |
| License | Artistic-2.0 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, Sequencing, Software, Transcription |
| Package Short Url | https://bioconductor.org/packages/MBASED/ |
Citation
From within R, enter citation("MBASED"):
Oleg Mayba, Houston Gilbert. MBASED: Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection. doi:10.18129/B9.bioc.MBASED, R package version 1.46.0, https://bioconductor.org/packages/MBASED.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | MBASED_1.46.0.tar.gz |
| Windows binary (x86_64) | MBASED_1.46.0.zip |
| macOS binary (arm64) | MBASED_1.46.0.tgz |
| macOS binary (x86_64) | MBASED_1.46.0.tgz |
Dependencies
Depends: RUnit, BiocGenerics, BiocParallel, GenomicRanges, SummarizedExperiment
Suggests: BiocStyle