LoomExperiment
LoomExperiment container
Bioconductor version: Release (3.19)
The LoomExperiment package provide a means to easily convert the Bioconductor "Experiment" classes to loom files and vice versa.
Author: Martin Morgan, Daniel Van Twisk
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter
citation("LoomExperiment")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("LoomExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("LoomExperiment")
An introduction to the LoomExperiment class | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, DataRepresentation, ImmunoOncology, Infrastructure, SingleCell, Software |
Version | 1.22.0 |
In Bioconductor since | BioC 3.8 (R-3.5) (6 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5.0), S4Vectors, SingleCellExperiment, SummarizedExperiment, methods, rhdf5, BiocIO |
Imports | DelayedArray, GenomicRanges, HDF5Array, Matrix, stats, stringr, utils |
System Requirements | |
URL |
See More
Suggests | testthat, BiocStyle, knitr, rmarkdown, reticulate |
Linking To | |
Enhances | |
Depends On Me | OSCA.intro |
Imports Me | |
Suggests Me | adverSCarial, hca |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | LoomExperiment_1.22.0.tar.gz |
Windows Binary | LoomExperiment_1.22.0.zip |
macOS Binary (x86_64) | LoomExperiment_1.22.0.tgz |
macOS Binary (arm64) | LoomExperiment_1.22.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/LoomExperiment |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/LoomExperiment |
Bioc Package Browser | https://code.bioconductor.org/browse/LoomExperiment/ |
Package Short Url | https://bioconductor.org/packages/LoomExperiment/ |
Package Downloads Report | Download Stats |