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LoomExperiment

LoomExperiment container


Bioconductor version: Release (3.18)

The LoomExperiment package provide a means to easily convert the Bioconductor "Experiment" classes to loom files and vice versa.

Author: Martin Morgan, Daniel Van Twisk

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("LoomExperiment")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LoomExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LoomExperiment")
An introduction to the LoomExperiment class HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, DataRepresentation, ImmunoOncology, Infrastructure, SingleCell, Software
Version 1.20.0
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), S4Vectors, SingleCellExperiment, SummarizedExperiment, methods, rhdf5, BiocIO
Imports DelayedArray, GenomicRanges, HDF5Array, Matrix, stats, stringr, utils
System Requirements
URL
See More
Suggests testthat, BiocStyle, knitr, rmarkdown, reticulate
Linking To
Enhances
Depends On Me OSCA.intro
Imports Me scfetch
Suggests Me adverSCarial, hca
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LoomExperiment_1.20.0.tar.gz
Windows Binary LoomExperiment_1.20.0.zip (64-bit only)
macOS Binary (x86_64) LoomExperiment_1.20.0.tgz
macOS Binary (arm64) LoomExperiment_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/LoomExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LoomExperiment
Bioc Package Browser https://code.bioconductor.org/browse/LoomExperiment/
Package Short Url https://bioconductor.org/packages/LoomExperiment/
Package Downloads Report Download Stats