IdeoViz

This is the released version of IdeoViz; for the devel version, see IdeoViz.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Plots data (continuous/discrete) along chromosomal ideogram

Bioconductor version: Release (3.23)

Plots data associated with arbitrary genomic intervals along chromosomal ideogram.

Author: Shraddha Pai <shraddha.pai at utoronto.ca>, Jingliang Ren

Maintainer: Shraddha Pai <shraddha.pai at utoronto.ca>

Citation (from within R, enter citation("IdeoViz")):

Shraddha Pai, Jingliang Ren. IdeoViz: Plots data (continuous/discrete) along chromosomal ideogram. doi:10.18129/B9.bioc.IdeoViz, R package version 1.48.0, https://bioconductor.org/packages/IdeoViz.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IdeoViz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Microarray, Software, Visualization
Version	1.48.0
In Bioconductor since	BioC 3.0 (R-3.1) (12 years)
License	GPL-2
Depends	R (>= 3.5.0), Biobase, IRanges, GenomicRanges, RColorBrewer, rtracklayer, graphics, GenomeInfoDb
Imports
System Requirements
URL

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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	IdeoViz_1.48.0.tar.gz
Windows Binary (x86_64)	IdeoViz_1.48.0.zip
macOS Binary (big-sur-x86_64)	IdeoViz_1.48.0.tgz
macOS Binary (sonoma-arm64)	IdeoViz_1.48.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/IdeoViz
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/IdeoViz
Package Short Url	https://bioconductor.org/packages/IdeoViz/
Package Downloads Report	Download Stats