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HiCParser

This is the released version of HiCParser; for the devel version, see HiCParser.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21

Parser for HiC data in R

DOI: 10.18129/B9.bioc.HiCParser

Bioconductor version: Release (3.23)

This package is a parser to import HiC data into R. It accepts several type of data: tabular files, Cooler `.cool` or `.mcool` files, Juicer `.hic` files or HiC-Pro `.matrix` and `.bed` files. The HiC data can be several files, for several replicates and conditions. The data is formated in an InteractionSet object.

Author: Zytnicki Matthias [aut], Maigné Élise [aut, cre]

Maintainer: Maigné Élise <elise.maigne at inrae.fr>

Citation (from within R, enter citation("HiCParser")):

Zytnicki Matthias, Maigné Élise. HiCParser: Parser for HiC data in R. doi:10.18129/B9.bioc.HiCParser, R package version 1.4.0, https://bioconductor.org/packages/HiCParser.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HiCParser")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCParser")

Details

Package Archives

Follow Installation instructions to use this package in your R session.