GladiaTOX

DOI: 10.18129/B9.bioc.GladiaTOX    

R Package for Processing High Content Screening data

Bioconductor version: Release (3.9)

GladiaTOX R package is an open-source, flexible solution to high-content screening data processing and reporting in biomedical research. GladiaTOX takes advantage of the tcpl core functionalities and provides a number of extensions: it provides a web-service solution to fetch raw data; it computes severity scores and exports ToxPi formatted files; furthermore it contains a suite of functionalities to generate pdf reports for quality control and data processing.

Author: Vincenzo Belcastro [aut, cre], Dayne L Filer [aut], Stephane Cano [aut]

Maintainer: PMP S.A. R Support <DL.RSupport at pmi.com>

Citation (from within R, enter citation("GladiaTOX")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GladiaTOX")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GladiaTOX")

 

HTML R Script GladiaTOX
PDF   Reference Manual
Text   NEWS

Details

biocViews Normalization, Preprocessing, QualityControl, Software, WorkflowStep
Version 1.0.0
In Bioconductor since BioC 3.9 (R-3.6) (< 6 months)
License GPL-2
Depends R (>= 3.6.0), data.table (>= 1.9.4)
Imports DBI, RMySQL, RSQLite, numDeriv, RColorBrewer, parallel, stats, methods, graphics, grDevices, xtable, tools, brew, stringr, RJSONIO, ggplot2, ggrepel, tidyr, utils, RCurl, XML
LinkingTo
Suggests roxygen2, knitr, rmarkdown, testthat, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GladiaTOX_1.0.0.tar.gz
Windows Binary GladiaTOX_1.0.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) GladiaTOX_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GladiaTOX
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GladiaTOX
Package Short Url http://bioconductor.org/packages/GladiaTOX/
Package Downloads Report Download Stats

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