Bioconductor Developer Survey 2026 Now Open!

GenomicTuples

This is the released version of GenomicTuples; for the devel version, see GenomicTuples.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Representation and Manipulation of Genomic Tuples


Bioconductor version: Release (3.23)

GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.

Author: Peter Hickey [aut, cre], Marcin Cieslik [ctb], Hervé Pagès [ctb]

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("GenomicTuples")):

Peter Hickey. GenomicTuples: Representation and Manipulation of Genomic Tuples. doi:10.18129/B9.bioc.GenomicTuples, R package version 1.46.0, https://bioconductor.org/packages/GenomicTuples.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GenomicTuples")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicTuples")
GenomicTuplesIntroduction HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews DataRepresentation, Infrastructure, Sequencing, Software
Version1.46.0
In Bioconductor sinceBioC 3.0 (R-3.1) (12 years)
License Artistic-2.0
Depends R (>= 4.0), GenomicRanges (>= 1.37.4), Seqinfo, S4Vectors (>= 0.17.25)
Imports methods, BiocGenerics (>= 0.21.2), Rcpp (>= 0.11.2), IRanges (>= 2.19.13), data.table, stats4, stats, utils
System Requirements
URLwww.github.com/PeteHaitch/GenomicTuples
Bug Reportshttps://github.com/PeteHaitch/GenomicTuples/issues
See More
Suggests testthat, knitr, BiocStyle, rmarkdown, covr, GenomicAlignments, Biostrings, GenomeInfoDb
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GenomicTuples_1.46.0.tar.gz
Windows Binary (x86_64) GenomicTuples_1.46.0.zip
macOS Binary (big-sur-x86_64) GenomicTuples_1.46.0.tgz
macOS Binary (sonoma-arm64) GenomicTuples_1.46.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/GenomicTuples
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/GenomicTuples
Package Short Url https://bioconductor.org/packages/GenomicTuples/
Package Downloads ReportDownload Stats