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GeneticsPed

This is the released version of GeneticsPed; for the devel version, see GeneticsPed.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Pedigree and genetic relationship functions


Bioconductor version: Release (3.23)

Classes and methods for handling pedigree data. It also includes functions to calculate genetic relationship measures as relationship and inbreeding coefficients and other utilities. Note that package is not yet stable. Use it with care!

Author: Gregor Gorjanc and David A. Henderson <DNADavenator at GMail.Com>, with code contributions by Brian Kinghorn and Andrew Percy (see file COPYING)

Maintainer: David Henderson <DNADavenator at GMail.Com>

Citation (from within R, enter citation("GeneticsPed")):

Gregor Gorjanc and David A. Henderson, with code contributions by Brian Kinghorn and Andrew Percy. GeneticsPed: Pedigree and genetic relationship functions. doi:10.18129/B9.bioc.GeneticsPed, R package version 1.74.0, https://bioconductor.org/packages/GeneticsPed.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneticsPed")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneticsPed")
Calculation of genetic relatedness/relationship between individuals in the pedigree PDF R Script
Pedigree handling PDF R Script
Quantitative genetic (animal) model example in R PDF R Script
Reference ManualPDF
NEWSText
LICENSEText

Details

biocViews Genetics, Software
Version1.74.0
In Bioconductor sinceBioC 2.0 (R-2.5) (19.5 years)
License LGPL (>= 2.1) | file LICENSE
Depends R (>= 2.4.0), MASS
Imports gdata, genetics
System Requirements
URLhttp://rgenetics.org
See More
Suggests RUnit, gtools
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeneticsPed_1.74.0.tar.gz
Windows Binary (x86_64) GeneticsPed_1.74.0.zip
macOS Binary (big-sur-x86_64) GeneticsPed_1.74.0.tgz
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/GeneticsPed
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/GeneticsPed
Package Short Url https://bioconductor.org/packages/GeneticsPed/
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