GeneStructureTools

DOI: 10.18129/B9.bioc.GeneStructureTools    

Tools for spliced gene structure manipulation and analysis

Bioconductor version: Release (3.7)

GeneStructureTools can be used to create in silico alternative splicing events, and analyse potential effects this has on functional gene products.

Author: Beth Signal

Maintainer: Beth Signal <b.signal at garvan.org.au>

Citation (from within R, enter citation("GeneStructureTools")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeneStructureTools")

Documentation

HTML R Script Introduction to GeneStructureTools
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews AlternativeSplicing, DifferentialSplicing, FunctionalPrediction, RNASeq, Software, Transcriptomics
Version 1.0.0
License BSD_3_clause + file LICENSE
Depends
Imports Biostrings, GenomicRanges, IRanges, data.table, plyr, stringdist, stringr, S4Vectors, BSgenome.Mmusculus.UCSC.mm10, stats, utils, Gviz, rtracklayer, methods
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeneStructureTools_1.0.0.tar.gz
Windows Binary GeneStructureTools_1.0.0.zip
Mac OS X 10.11 (El Capitan) GeneStructureTools_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GeneStructureTools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GeneStructureTools
Package Short Url http://bioconductor.org/packages/GeneStructureTools/
Package Downloads Report Download Stats

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