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GeneStructureTools

This is the released version of GeneStructureTools; for the devel version, see GeneStructureTools.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Tools for spliced gene structure manipulation and analysis


Bioconductor version: Release (3.23)

GeneStructureTools can be used to create in silico alternative splicing events, and analyse potential effects this has on functional gene products.

Author: Beth Signal

Maintainer: Beth Signal <b.signal at garvan.org.au>

Citation (from within R, enter citation("GeneStructureTools")):

Beth Signal. GeneStructureTools: Tools for spliced gene structure manipulation and analysis. doi:10.18129/B9.bioc.GeneStructureTools, R package version 1.32.0, https://bioconductor.org/packages/GeneStructureTools.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneStructureTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneStructureTools")
Introduction to GeneStructureTools HTML R Script
Reference ManualPDF
NEWSText
LICENSEText

Details

biocViews AlternativeSplicing, DifferentialSplicing, FunctionalPrediction, ImmunoOncology, RNASeq, Software, Transcriptomics
Version1.32.0
In Bioconductor sinceBioC 3.7 (R-3.5) (8.5 years)
License BSD_3_clause + file LICENSE
Depends
Imports Biostrings, GenomicRanges, IRanges, data.table, plyr, stringdist, stringr, S4Vectors, BSgenome.Mmusculus.UCSC.mm10, stats, utils, Gviz, rtracklayer, methods
System Requirements
URL
See More
Suggests BiocStyle, knitr, rmarkdown
Linking To
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Depends On Me
Imports Me
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Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeneStructureTools_1.32.0.tar.gz
Windows Binary (x86_64) GeneStructureTools_1.32.0.zip (64-bit only)
macOS Binary (big-sur-x86_64) GeneStructureTools_1.32.0.tgz
macOS Binary (sonoma-arm64) GeneStructureTools_1.32.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/GeneStructureTools
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/GeneStructureTools
Package Short Url https://bioconductor.org/packages/GeneStructureTools/
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