GeneRegionScan
GeneRegionScan
Bioconductor version: 3.23 · Package version: 1.68.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
A package with focus on analysis of discrete regions of the genome. This package is useful for investigation of one or a few genes using Affymetrix data, since it will extract probe level data using the Affymetrix Power Tools application and wrap these data into a ProbeLevelSet. A ProbeLevelSet directly extends the expressionSet, but includes additional information about the sequence of each probe and the probe set it is derived from. The package includes a number of functions used for plotting these probe level data as a function of location along sequences of mRNA-strands. This can be used for analysis of variable splicing, and is especially well suited for use with exon-array data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeneRegionScan")Details
| Maintainer | Lasse Folkersen <lasfol@cbs.dtu.dk> |
| Author | Lasse Folkersen, Diego Diez |
| License | GPL (>= 2) |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, Microarray, OneChannel, SNP, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/GeneRegionScan/ |
Citation
From within R, enter citation("GeneRegionScan"):
Lasse Folkersen, Diego Diez. GeneRegionScan: GeneRegionScan. doi:10.18129/B9.bioc.GeneRegionScan, R package version 1.68.0, https://bioconductor.org/packages/GeneRegionScan.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | GeneRegionScan_1.68.0.tar.gz |
| Windows binary (x86_64) | GeneRegionScan_1.68.0.zip |
| macOS binary (arm64) | GeneRegionScan_1.68.0.tgz |
| macOS binary (x86_64) | GeneRegionScan_1.68.0.tgz |
Dependencies
Depends: methods, Biobase (>= 2.5.5), Biostrings
Imports: S4Vectors (>= 0.9.25), Biobase (>= 2.5.5), affxparser, RColorBrewer, Biostrings
Suggests: BSgenome, affy, AnnotationDbi