GeneBreak
Gene Break Detection
Bioconductor version: 3.23 · Package version: 1.42.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Recurrent breakpoint gene detection on copy number aberration profiles.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeneBreak")Details
| Maintainer | Evert van den Broek <vandenbroek.evert@gmail.com> |
| Author | Evert van den Broek, Stef van Lieshout |
| License | GPL-2 |
| URL | https://github.com/stefvanlieshout/GeneBreak |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | CopyNumberVariation, DNASeq, Genetics, Sequencing, Software, Visualization, WholeGenome, aCGH |
| Package Short Url | https://bioconductor.org/packages/GeneBreak/ |
Citation
From within R, enter citation("GeneBreak"):
Evert van den Broek, Stef van Lieshout. GeneBreak: Gene Break Detection. doi:10.18129/B9.bioc.GeneBreak, R package version 1.42.0, https://bioconductor.org/packages/GeneBreak.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | GeneBreak_1.42.0.tar.gz |
| Windows binary (x86_64) | GeneBreak_1.42.0.zip |
| macOS binary (arm64) | GeneBreak_1.42.0.tgz |
| macOS binary (x86_64) | GeneBreak_1.42.0.tgz |
Dependencies
Depends: R (>= 3.2), QDNAseq, CGHcall, CGHbase, GenomicRanges
Imports: graphics, methods