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GeneBreak

Gene Break Detection


Bioconductor version: Release (3.18)

Recurrent breakpoint gene detection on copy number aberration profiles.

Author: Evert van den Broek, Stef van Lieshout

Maintainer: Evert van den Broek <vandenbroek.evert at gmail.com>

Citation (from within R, enter citation("GeneBreak")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneBreak")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneBreak")
GeneBreak PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CopyNumberVariation, DNASeq, Genetics, Sequencing, Software, Visualization, WholeGenome, aCGH
Version 1.32.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL-2
Depends R (>= 3.2), QDNAseq, CGHcall, CGHbase, GenomicRanges
Imports graphics, methods
System Requirements
URL https://github.com/stefvanlieshout/GeneBreak
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeneBreak_1.32.0.tar.gz
Windows Binary GeneBreak_1.32.0.zip (64-bit only)
macOS Binary (x86_64) GeneBreak_1.32.0.tgz
macOS Binary (arm64) GeneBreak_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GeneBreak
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GeneBreak
Bioc Package Browser https://code.bioconductor.org/browse/GeneBreak/
Package Short Url https://bioconductor.org/packages/GeneBreak/
Package Downloads Report Download Stats