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Genomics explorer using statistical and survival analysis in R

Bioconductor version: Release (3.18)

GNOSIS incorporates a range of R packages enabling users to efficiently explore and visualise clinical and genomic data obtained from cBioPortal. GNOSIS uses an intuitive GUI and multiple tab panels supporting a range of functionalities. These include data upload and initial exploration, data recoding and subsetting, multiple visualisations, survival analysis, statistical analysis and mutation analysis, in addition to facilitating reproducible research.

Author: Lydia King [aut, cre] , Marcel Ramos [ctb]

Maintainer: Lydia King <l.king18 at universityofgalway.ie>

Citation (from within R, enter citation("GNOSIS")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

GNOSIS Overview HTML R Script
Reference Manual PDF
GNOSIS: an R Shiny app supporting cancer genomics survival analysis with cBioPortal Video


biocViews GUI, ShinyApps, Software, Survival
Version 1.0.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License MIT + file LICENSE
Depends R (>= 4.3.0), shiny, shinydashboard, shinydashboardPlus, dashboardthemes, shinyWidgets, shinymeta, tidyverse, operator.tools, maftools
Imports DT, fontawesome, shinycssloaders, cBioPortalData, shinyjs, reshape2, RColorBrewer, survival, survminer, stats, compareGroups, rpart, partykit, DescTools, car, rstatix, fabricatr, shinylogs, magrittr
System Requirements
URL https://github.com/Lydia-King/GNOSIS/
Bug Reports https://github.com/Lydia-King/GNOSIS/issues
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Suggests BiocStyle, knitr, rmarkdown
Linking To
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GNOSIS_1.0.0.tar.gz
Windows Binary GNOSIS_1.0.0.zip
macOS Binary (x86_64) GNOSIS_1.0.0.tgz
macOS Binary (arm64) GNOSIS_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GNOSIS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GNOSIS
Bioc Package Browser https://code.bioconductor.org/browse/GNOSIS/
Package Short Url https://bioconductor.org/packages/GNOSIS/
Package Downloads Report Download Stats