FitHiC
Confidence estimation for intra-chromosomal contact maps
Bioconductor version: 3.23 · Package version: 1.38.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Fit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("FitHiC")Details
| Maintainer | Ruyu Tan <rut003@ucsd.edu> |
| Author | Ferhat Ay [aut] (Python original, https://noble.gs.washington.edu/proj/fit-hi-c/), Timothy L. Bailey [aut], William S. Noble [aut], Ruyu Tan [aut, cre, trl] (R port) |
| License | GPL (>= 2) |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DNA3DStructure, Software |
| Package Short Url | https://bioconductor.org/packages/FitHiC/ |
Citation
From within R, enter citation("FitHiC"):
Ferhat Ay, Timothy L. Bailey, William S. Noble, Ruyu Tan. FitHiC: Confidence estimation for intra-chromosomal contact maps. doi:10.18129/B9.bioc.FitHiC, R package version 1.38.0, https://bioconductor.org/packages/FitHiC.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | FitHiC_1.38.0.tar.gz |
| Windows binary (x86_64) | FitHiC_1.38.0.zip |
| macOS binary (arm64) | FitHiC_1.38.0.tgz |
| macOS binary (x86_64) | FitHiC_1.38.0.tgz |