ExploreModelMatrix

DOI: 10.18129/B9.bioc.ExploreModelMatrix    

Graphical Exploration of Design Matrices

Bioconductor version: Release (3.12)

Given a sample data table and a design formula, ExploreModelMatrix generates an interactive application for exploration of the resulting design matrix. This can be helpful for interpreting model coefficients and constructing appropriate contrasts in (generalized) linear models. Static visualizations can also be generated.

Author: Charlotte Soneson [aut, cre] , Federico Marini [aut] , Michael Love [aut] , Florian Geier [aut] , Michael Stadler [aut]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("ExploreModelMatrix")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ExploreModelMatrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExploreModelMatrix")

 

HTML R Script ExploreModelMatrix
HTML R Script ExploreModelMatrix-deploy
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DifferentialExpression, ExperimentalDesign, Regression, Software
Version 1.2.0
In Bioconductor since BioC 3.11 (R-4.0) (0.5 years)
License MIT + file LICENSE
Depends
Imports shiny (>= 1.5.0), shinydashboard, DT, cowplot, utils, dplyr, magrittr, tidyr, ggplot2, stats, methods, rintrojs, scales, tibble, MASS, limma, S4Vectors, shinyjs
LinkingTo
Suggests testthat (>= 2.1.0), knitr, rmarkdown, htmltools, BiocStyle
SystemRequirements
Enhances
URL https://github.com/csoneson/ExploreModelMatrix
BugReports https://github.com/csoneson/ExploreModelMatrix/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ExploreModelMatrix_1.2.0.tar.gz
Windows Binary ExploreModelMatrix_1.2.0.zip
macOS 10.13 (High Sierra) ExploreModelMatrix_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ExploreModelMatrix
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ExploreModelMatrix
Package Short Url https://bioconductor.org/packages/ExploreModelMatrix/
Package Downloads Report Download Stats

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