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EBSEA

Exon Based Strategy for Expression Analysis of genes

Bioconductor version: 3.23 · Package version: 1.40.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

3.24 (devel), 3.23 (release)

Calculates differential expression of genes based on exon counts of genes obtained from RNA-seq sequencing data.

DOI: 10.18129/B9.bioc.EBSEA

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EBSEA")

Details

MaintainerArfa Mehmood <arfa.mehmood@utu.fi>
AuthorArfa Mehmood, Asta Laiho, Laura L. Elo
LicenseGPL-2
Source branchRELEASE_3_23
Build report Bioconductor build system, r-universe
biocViewsDifferentialExpression, GeneExpression, Sequencing, Software
Package Short Url https://bioconductor.org/packages/EBSEA/

Citation

From within R, enter citation("EBSEA"):

Arfa Mehmood, Asta Laiho, Laura L. Elo. EBSEA: Exon Based Strategy for Expression Analysis of genes. doi:10.18129/B9.bioc.EBSEA, R package version 1.40.0, https://bioconductor.org/packages/EBSEA.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageEBSEA_1.40.0.tar.gz
Windows binary (x86_64)EBSEA_1.40.0.zip
macOS binary (arm64)EBSEA_1.40.0.tgz
macOS binary (x86_64)EBSEA_1.40.0.tgz
Dependencies

Depends: R (>= 4.0.0)

Imports: DESeq2, graphics, stats, EmpiricalBrownsMethod

Suggests: knitr, rmarkdown