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DiffLogo

DiffLogo: A comparative visualisation of biooligomer motifs


Bioconductor version: Release (3.18)

DiffLogo is an easy-to-use tool to visualize motif differences.

Author: c( person("Martin", "Nettling", role = c("aut", "cre"), email = "martin.nettling@informatik.uni-halle.de"), person("Hendrik", "Treutler", role = c("aut", "cre"), email = "hendrik.treutler@ipb-halle.de"), person("Jan", "Grau", role = c("aut", "ctb"), email = "grau@informatik.uni-halle.de"), person("Andrey", "Lando", role = c("aut", "ctb"), email = "dronte@autosome.ru"), person("Jens", "Keilwagen", role = c("aut", "ctb"), email = "jens.keilwagen@julius-kuehn.de"), person("Stefan", "Posch", role = "aut", email = "posch@informatik.uni-halle.de"), person("Ivo", "Grosse", role = "aut", email = "grosse@informatik.uni-halle.de"))

Maintainer: Hendrik Treutler<hendrik.treutler at gmail.com>

Citation (from within R, enter citation("DiffLogo")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DiffLogo")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DiffLogo")
Basics of the DiffLogo package PDF R Script
Reference Manual PDF

Details

biocViews Alignment, MotifAnnotation, MultipleComparison, SequenceMatching, Software, Visualization
Version 2.26.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL (>= 2)
Depends R (>= 3.4), stats, cba
Imports grDevices, graphics, utils, tools
System Requirements
URL https://github.com/mgledi/DiffLogo/
Bug Reports https://github.com/mgledi/DiffLogo/issues
See More
Suggests knitr, testthat, seqLogo, MotifDb
Linking To
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Depends On Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DiffLogo_2.26.0.tar.gz
Windows Binary DiffLogo_2.26.0.zip (64-bit only)
macOS Binary (x86_64) DiffLogo_2.26.0.tgz
macOS Binary (arm64) DiffLogo_2.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DiffLogo
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DiffLogo
Bioc Package Browser https://code.bioconductor.org/browse/DiffLogo/
Package Short Url https://bioconductor.org/packages/DiffLogo/
Package Downloads Report Download Stats