DelayedMatrixStats

This is the released version of DelayedMatrixStats; for the devel version, see DelayedMatrixStats.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects

Bioconductor version: Release (3.23)

A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.

Author: Peter Hickey [aut, cre] ORCID: 0000-0002-8153-6258 , Hervé Pagès [ctb], Aaron Lun [ctb]

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("DelayedMatrixStats")):

Peter Hickey. DelayedMatrixStats: Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects. doi:10.18129/B9.bioc.DelayedMatrixStats, R package version 1.34.0, https://bioconductor.org/packages/DelayedMatrixStats.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DelayedMatrixStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DelayedMatrixStats")

Overview of DelayedMatrixStats	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataRepresentation, Infrastructure, Software
Version	1.34.0
In Bioconductor since	BioC 3.6 (R-3.4) (9 years)
License	MIT + file LICENSE
Depends	MatrixGenerics (>= 1.15.1), DelayedArray (>= 0.31.7)
Imports	methods, sparseMatrixStats (>= 1.13.2), Matrix (>= 1.5-0), S4Vectors (>= 0.17.5), IRanges (>= 2.25.10), SparseArray (>= 1.5.19)
System Requirements
URL	https://github.com/PeteHaitch/DelayedMatrixStats
Bug Reports	https://github.com/PeteHaitch/DelayedMatrixStats/issues

Suggests	testthat, knitr, rmarkdown, BiocStyle, microbenchmark, profmem, HDF5Array, matrixStats (>= 1.0.0)
Linking To
Enhances
Depends On Me
Imports Me	AUCell, batchelor, biscuiteer, bsseq, celldex, Cepo, DeconvoBuddies, dmrseq, dreamlet, DropletUtils, FRASER, glmGamPoi, GSVA, lemur, methrix, methylSig, mia, minfi, mumosa, NetActivity, PCAtools, RBedMethyl, recountmethylation, SCArray, scFeatures, scMerge, scone, Seqtometry, singleCellTK, sparrow, spatialGE, SpliceWiz, SVP, weitrix
Suggests Me	blase, ClustAssess, condiments, dandelionR, DelayedArray, escape, EWCE, HDF5Array, MatrixGenerics, mbkmeans, ScaledMatrix, scater, scPCA, scran, scuttle, slingshot, SplineDV, tradeSeq, TrajectoryUtils, Voyager
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DelayedMatrixStats_1.34.0.tar.gz
Windows Binary (x86_64)	DelayedMatrixStats_1.34.0.zip
macOS Binary (big-sur-x86_64)	DelayedMatrixStats_1.34.0.tgz
macOS Binary (sonoma-arm64)	DelayedMatrixStats_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DelayedMatrixStats
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DelayedMatrixStats
Package Short Url	https://bioconductor.org/packages/DelayedMatrixStats/
Package Downloads Report	Download Stats