DAMEfinder
This is the released version of DAMEfinder; for the devel version, see DAMEfinder.
All Bioconductor versions of DAMEfinder
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11
Finds DAMEs - Differential Allelicly MEthylated regions
Bioconductor version: 3.23 · Package version: 1.24.0
'DAMEfinder' offers functionality for taking methtuple or bismark outputs to calculate ASM scores and compute DAMEs. It also offers nice visualization of methyl-circle plots.
Author: Stephany Orjuela [aut, cre] 
, Dania Machlab [aut], Mark Robinson [aut]
Maintainer: Stephany Orjuela <sorjuelal at gmail.com>
Citation
From within R, enter citation("DAMEfinder"):
Stephany Orjuela, Dania Machlab, Mark Robinson. DAMEfinder: Finds DAMEs - Differential Allelicly MEthylated regions. doi:10.18129/B9.bioc.DAMEfinder, R package version 1.24.0, https://bioconductor.org/packages/DAMEfinder.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DAMEfinder")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.24.0 |
| License | MIT + file LICENSE |
| Bug Reports | https://github.com/markrobinsonuzh/DAMEfinder/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.11 (R-4.0) (6 years) |
| Downloads rank | 822 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Coverage, DNAMethylation, DifferentialMethylation, Software |
| Package Short Url | https://bioconductor.org/packages/DAMEfinder/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DAMEfinder")| DAMEfinder Workflow | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | DAMEfinder_1.24.0.tar.gz |
| Windows binary (x86_64) | DAMEfinder_1.24.0.zip |
| macOS binary (arm64) | DAMEfinder_1.24.0.tgz |
| macOS binary (x86_64) | DAMEfinder_1.24.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DAMEfinder |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DAMEfinder |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.0)
Imports: stats, Seqinfo, GenomicRanges, IRanges, S4Vectors, readr, SummarizedExperiment, GenomicAlignments, stringr, plyr, VariantAnnotation, parallel, ggplot2, Rsamtools, BiocGenerics, methods, limma, bumphunter, Biostrings, reshape2, cowplot, utils
Suggests: BiocStyle, knitr, rmarkdown, testthat, rtracklayer, BSgenome.Hsapiens.UCSC.hg19