CyTOFpower

DOI: 10.18129/B9.bioc.CyTOFpower    

Power analysis for CyTOF experiments

Bioconductor version: Release (3.14)

This package is a tool to predict the power of CyTOF experiments in the context of differential state analyses. The package provides a shiny app with two options to predict the power of an experiment: i. generation of in-sicilico CyTOF data, using users input ii. browsing in a grid of parameters for which the power was already precomputed.

Author: Anne-Maud Ferreira [cre, aut] , Catherine Blish [aut], Susan Holmes [aut]

Maintainer: Anne-Maud Ferreira <anne-maud.ferreira at stanford.edu>

Citation (from within R, enter citation("CyTOFpower")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CyTOFpower")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CyTOFpower")

 

HTML R Script Power analysis for CyTOF experiments
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBiology, FlowCytometry, SingleCell, Software, StatisticalMethod
Version 1.0.0
In Bioconductor since BioC 3.14 (R-4.1) (< 6 months)
License LGPL-3
Depends R (>= 4.1)
Imports CytoGLMM, diffcyt, DT, dplyr, ggplot2, magrittr, methods, rlang, stats, shiny, shinyFeedback, shinyjs, shinyMatrix, SummarizedExperiment, tibble, tidyr
LinkingTo
Suggests testthat (>= 3.0.0), BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CyTOFpower_1.0.0.tar.gz
Windows Binary CyTOFpower_1.0.0.zip
macOS 10.13 (High Sierra) CyTOFpower_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CyTOFpower
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CyTOFpower
Package Short Url https://bioconductor.org/packages/CyTOFpower/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

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