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CNViz

This is the released version of CNViz; for the devel version, see CNViz.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13

Copy Number Visualization

DOI: 10.18129/B9.bioc.CNViz

Bioconductor version: Release (3.23)

CNViz takes probe, gene, and segment-level log2 copy number ratios and launches a Shiny app to visualize your sample's copy number profile. You can also integrate loss of heterozygosity (LOH) and single nucleotide variant (SNV) data.

Author: Rebecca Greenblatt [aut, cre]

Maintainer: Rebecca Greenblatt <rebecca.greenblatt at gmail.com>

Citation (from within R, enter citation("CNViz")):

Rebecca Greenblatt. CNViz: Copy Number Visualization. doi:10.18129/B9.bioc.CNViz, R package version 1.20.0, https://bioconductor.org/packages/CNViz.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNViz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNViz")

Details

Package Archives

Follow Installation instructions to use this package in your R session.