CNORfuzzy

This is the released version of CNORfuzzy; for the devel version, see CNORfuzzy.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11

Addon to CellNOptR: Fuzzy Logic

Bioconductor version: Release (3.23)

This package is an extension to CellNOptR. It contains additional functionality needed to simulate and train a prior knowledge network to experimental data using constrained fuzzy logic (cFL, rather than Boolean logic as is the case in CellNOptR). Additionally, this package will contain functions to use for the compilation of multiple optimization results (either Boolean or cFL).

Author: M. Morris, T. Cokelaer

Maintainer: T. Cokelaer <cokelaer at ebi.ac.uk>

Citation (from within R, enter citation("CNORfuzzy")):

M. Morris, T. Cokelaer. CNORfuzzy: Addon to CellNOptR: Fuzzy Logic. doi:10.18129/B9.bioc.CNORfuzzy, R package version 1.54.0, https://bioconductor.org/packages/CNORfuzzy.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNORfuzzy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORfuzzy")

Main vignette:Playing with networks using CNORfuzzyl	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Network, Software
Version	1.54.0
In Bioconductor since	BioC 2.11 (R-2.15) (14 years)
License	GPL-2
Depends	R (>= 2.15.0), CellNOptR (>= 1.4.0), nloptr (>= 0.8.5)
Imports
System Requirements
URL

Suggests	xtable, Rgraphviz, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CNORfuzzy_1.54.0.tar.gz
Windows Binary (x86_64)	CNORfuzzy_1.54.0.zip
macOS Binary (big-sur-x86_64)	CNORfuzzy_1.54.0.tgz
macOS Binary (sonoma-arm64)	CNORfuzzy_1.54.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CNORfuzzy
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CNORfuzzy
Package Short Url	https://bioconductor.org/packages/CNORfuzzy/
Package Downloads Report	Download Stats