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CNORfuzzy

Addon to CellNOptR: Fuzzy Logic


Bioconductor version: Release (3.18)

This package is an extension to CellNOptR. It contains additional functionality needed to simulate and train a prior knowledge network to experimental data using constrained fuzzy logic (cFL, rather than Boolean logic as is the case in CellNOptR). Additionally, this package will contain functions to use for the compilation of multiple optimization results (either Boolean or cFL).

Author: M. Morris, T. Cokelaer

Maintainer: T. Cokelaer <cokelaer at ebi.ac.uk>

Citation (from within R, enter citation("CNORfuzzy")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNORfuzzy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORfuzzy")
Main vignette:Playing with networks using CNORfuzzyl PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Network, Software
Version 1.44.0
In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)
License GPL-2
Depends R (>= 2.15.0), CellNOptR(>= 1.4.0), nloptr (>= 0.8.5)
Imports
System Requirements
URL
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Suggests xtable, Rgraphviz, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
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Links To Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CNORfuzzy_1.44.0.tar.gz
Windows Binary CNORfuzzy_1.44.0.zip (64-bit only)
macOS Binary (x86_64) CNORfuzzy_1.44.0.tgz
macOS Binary (arm64) CNORfuzzy_1.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CNORfuzzy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CNORfuzzy
Bioc Package Browser https://code.bioconductor.org/browse/CNORfuzzy/
Package Short Url https://bioconductor.org/packages/CNORfuzzy/
Package Downloads Report Download Stats