CHRONOS
CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
Bioconductor version: Release (3.19)
A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.
Author: Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos
Maintainer: Panos Balomenos <balomenos at upatras.gr>
citation("CHRONOS")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CHRONOS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CHRONOS")
CHRONOS | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | GraphAndNetwork, KEGG, Pathways, Software, SystemsBiology |
Version | 1.32.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (8.5 years) |
License | GPL-2 |
Depends | R (>= 3.5) |
Imports | XML, RCurl, RBGL, parallel, foreach, doParallel, openxlsx, igraph, circlize, graph, stats, utils, grDevices, graphics, methods, biomaRt, rJava |
System Requirements | Java version >= 1.7, Pandoc |
URL |
See More
Suggests | RUnit, BiocGenerics, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | CHRONOS_1.32.0.tar.gz |
Windows Binary | CHRONOS_1.32.0.zip |
macOS Binary (x86_64) | CHRONOS_1.32.0.tgz |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/CHRONOS |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CHRONOS |
Bioc Package Browser | https://code.bioconductor.org/browse/CHRONOS/ |
Package Short Url | https://bioconductor.org/packages/CHRONOS/ |
Package Downloads Report | Download Stats |