CGHnormaliter
Normalization of array CGH data with imbalanced aberrations.
Bioconductor version: 3.23 · Package version: 1.66.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CGHnormaliter")Details
| Maintainer | Bart P.P. van Houte <bvhoute@few.vu.nl> |
| Author | Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling |
| License | GPL (>= 3) |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | Microarray, Preprocessing, Software |
| Package Short Url | https://bioconductor.org/packages/CGHnormaliter/ |
Citation
From within R, enter citation("CGHnormaliter"):
Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling. CGHnormaliter: Normalization of array CGH data with imbalanced aberrations. doi:10.18129/B9.bioc.CGHnormaliter, R package version 1.66.0, https://bioconductor.org/packages/CGHnormaliter.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | CGHnormaliter_1.66.0.tar.gz |
| Windows binary (x86_64) | CGHnormaliter_1.66.0.zip |
| macOS binary (arm64) | CGHnormaliter_1.66.0.tgz |
| macOS binary (x86_64) | CGHnormaliter_1.66.0.tgz |
Dependencies
Depends: CGHcall (>= 2.17.0), CGHbase (>= 1.15.0)